PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919878.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LSD
Protein Properties Length: 139aa    MW: 14904.4 Da    PI: 8.1036
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919878.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1437.6e-142751125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL YP+GA+sV+Ca+C++V
  XP_010919878.1 27 CSGCRNLLLYPLGATSVCCAVCNAV 51
                    ************************9 PP

2zf-LSD129.89.9e-106690125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggC+ lL+   GA sV+C++C+t+
  XP_010919878.1 66 CGGCHMLLMHMHGAYSVQCSCCHTI 90
                    ***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.2E-132454IPR005735Zinc finger, LSD1-type
PfamPF069434.9E-112751IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.2E-106492IPR005735Zinc finger, LSD1-type
PfamPF069437.8E-96690IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MPVPLIPYAA PPVPFTPPNG SQSQIVCSGC RNLLLYPLGA TSVCCAVCNA VTVVPSPGTE  60
MARLVCGGCH MLLMHMHGAY SVQCSCCHTI NLALEGVMKS HYPSNSQYFS TPLGSHTSSI  120
VQQLLLMKRD QNYQLRAHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919878.18e-98PREDICTED: protein LSD1-like isoform X2
SwissprotQ0J7V94e-43LSD1_ORYSJ; Protein LSD1
TrEMBLW1PNK22e-51W1PNK2_AMBTC; Uncharacterized protein
STRINGVIT_02s0012g00990.t019e-49(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-30lsd one like 1